Variant report

Variant	rs17055782
Chromosome Location	chr6:128684813-128684814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128660307..128662449-chr6:128682596..128686708,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17055830	0.82[YRI][hapmap]
rs17055831	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17055837	0.83[YRI][hapmap]
rs17055841	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17055886	1.00[YRI][hapmap]
rs4587184	0.94[YRI][hapmap]
rs7774852	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128673000-128687800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:128674000-128685800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:128675000-128688000	Weak transcription	Gastric	stomach
4	chr6:128677400-128686000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:128678800-128697000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:128679600-128686600	Weak transcription	Right Ventricle	heart
7	chr6:128679600-128732000	Weak transcription	Left Ventricle	heart
8	chr6:128679800-128688000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:128679800-128697600	Weak transcription	HSMMtube	muscle
10	chr6:128680000-128685800	Weak transcription	Fetal Lung	lung
11	chr6:128680000-128686200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:128680000-128688600	Weak transcription	NHDF-Ad	bronchial
13	chr6:128680000-128691400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:128680200-128686600	Weak transcription	Stomach Mucosa	stomach
15	chr6:128680200-128687800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:128680200-128690200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:128680400-128685800	Weak transcription	Fetal Heart	heart
18	chr6:128680400-128688600	Weak transcription	Psoas Muscle	Psoas
19	chr6:128680400-128689600	Weak transcription	Osteobl	bone
20	chr6:128680600-128686200	Weak transcription	HepG2	liver
21	chr6:128680800-128686200	Weak transcription	Liver	Liver
22	chr6:128681800-128695600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:128683200-128686600	Enhancers	Fetal Intestine Large	intestine
24	chr6:128684200-128685000	Enhancers	Colon Smooth Muscle	Colon
25	chr6:128684200-128685200	Enhancers	Fetal Intestine Small	intestine
26	chr6:128684600-128685000	Enhancers	Brain Substantia Nigra	brain
27	chr6:128684600-128689400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:128684600-128689600	Weak transcription	Ovary	ovary
29	chr6:128684600-128696600	Weak transcription	HSMM	muscle
30	chr6:128684800-128686000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:128684800-128687800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:128684800-128688000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:128684800-128688400	Weak transcription	Small Intestine	intestine
34	chr6:128684800-128688600	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:128684800-128688600	Weak transcription	NHLF	lung
36	chr6:128684800-128696400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links