Variant report

Variant	rs17055821
Chromosome Location	chr13:38051221-38051222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17055781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055791	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9576278	0.85[AFR][1000 genomes]
rs9670600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38049400-38051400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr13:38049400-38051400	Enhancers	NH-A	brain
3	chr13:38049400-38051600	Enhancers	Osteobl	bone
4	chr13:38049400-38051800	Enhancers	NHDF-Ad	bronchial
5	chr13:38049600-38051600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:38049600-38054200	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:38049800-38051600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:38049800-38053600	Weak transcription	Fetal Lung	lung
9	chr13:38049800-38054000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:38050200-38051400	Enhancers	HMEC	breast
11	chr13:38050200-38051800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:38050400-38051600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr13:38050800-38051400	Enhancers	NHEK	skin
14	chr13:38051000-38051400	Enhancers	Stomach Smooth Muscle	stomach
15	chr13:38051000-38051400	Enhancers	NHLF	lung
16	chr13:38051000-38051600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:38051000-38051800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:38051200-38052000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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