Variant report

Variant	rs17055907
Chromosome Location	chr6:128799950-128799951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128798925..128800858-chr6:128805420..128807287,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12333125	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417900	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053280	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35801729	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921395	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321120	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482889	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491960	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491965	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491973	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491976	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128791200-128800000	Weak transcription	Aorta	Aorta
2	chr6:128793400-128803800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:128795400-128811600	Weak transcription	HSMMtube	muscle
4	chr6:128795600-128801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:128796000-128803800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:128796000-128811400	Weak transcription	HSMM	muscle
7	chr6:128796200-128801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:128796600-128803600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:128796800-128803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:128797200-128811600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:128797400-128800000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:128797400-128804800	Weak transcription	Fetal Heart	heart
13	chr6:128797400-128808200	Weak transcription	NH-A	brain
14	chr6:128797400-128822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:128797800-128808200	Weak transcription	NHEK	skin
16	chr6:128799000-128800400	Enhancers	Right Ventricle	heart
17	chr6:128799000-128801400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:128799200-128800000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:128799200-128800200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr6:128799200-128801400	Enhancers	HepG2	liver
21	chr6:128799200-128802200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:128799400-128800000	Active TSS	Primary T cells fromperipheralblood	blood
23	chr6:128799400-128800000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr6:128799400-128800000	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr6:128799400-128800000	Active TSS	Colonic Mucosa	Colon
26	chr6:128799400-128800000	Active TSS	Colon Smooth Muscle	Colon
27	chr6:128799400-128800000	Active TSS	Duodenum Mucosa	Duodenum
28	chr6:128799400-128800000	Active TSS	Ovary	ovary
29	chr6:128799400-128800000	Active TSS	Osteobl	bone
30	chr6:128799400-128800200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:128799400-128800200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:128799400-128800200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:128799400-128800200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:128799400-128800200	Active TSS	Adipose Nuclei	Adipose
35	chr6:128799400-128800200	Flanking Active TSS	Liver	Liver
36	chr6:128799400-128800200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
37	chr6:128799400-128800200	Enhancers	Esophagus	oesophagus
38	chr6:128799400-128800200	Enhancers	Placenta	Placenta
39	chr6:128799400-128800200	Enhancers	Fetal Thymus	thymus
40	chr6:128799400-128800200	Enhancers	Left Ventricle	heart
41	chr6:128799400-128800200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr6:128799400-128800200	Enhancers	A549	lung
43	chr6:128799400-128800400	Enhancers	Gastric	stomach
44	chr6:128799400-128800400	Active TSS	NHLF	lung
45	chr6:128799400-128800600	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr6:128799400-128800600	Enhancers	Spleen	Spleen
47	chr6:128799400-128800800	Enhancers	Small Intestine	intestine
48	chr6:128799600-128800000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:128799600-128800000	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr6:128799600-128800000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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