Variant report

Variant	rs17056105
Chromosome Location	chr13:38157420-38157421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11840960	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12428760	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12585355	0.95[ASN][1000 genomes]
rs17056258	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1924293	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35092366	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41473348	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4943526	1.00[CEU][hapmap]
rs57400150	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59664730	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60396302	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6563562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335337	1.00[JPT][hapmap]
rs73452525	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73452550	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452553	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73452556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997479	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9532083	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9532102	0.82[CEU][hapmap]
rs9547948	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547949	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547950	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547955	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547971	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547972	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547973	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547975	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547982	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9547984	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9547993	0.83[EUR][1000 genomes]
rs9547995	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9548009	0.82[CEU][hapmap]
rs9548024	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38135200-38168800	Strong transcription	Osteobl	bone
2	chr13:38135600-38165400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:38139000-38171000	Weak transcription	Fetal Kidney	kidney
4	chr13:38142200-38160200	Weak transcription	Left Ventricle	heart
5	chr13:38143400-38166000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:38146200-38161200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:38146600-38162000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr13:38148000-38167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:38148400-38161200	Strong transcription	Fetal Lung	lung
10	chr13:38149200-38160800	Strong transcription	Placenta	Placenta
11	chr13:38150000-38171000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:38150200-38171400	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:38151200-38162200	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr13:38152600-38171200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr13:38155400-38158000	Weak transcription	NH-A	brain
16	chr13:38155400-38168600	Weak transcription	Fetal Heart	heart
17	chr13:38155400-38168800	Weak transcription	NHLF	lung
18	chr13:38155600-38158000	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:38155800-38158000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr13:38156000-38157600	Weak transcription	Fetal Stomach	stomach

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