Variant report

Variant	rs17056123
Chromosome Location	chr13:38161377-38161378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17055981	1.00[AMR][1000 genomes]
rs17056104	1.00[AMR][1000 genomes]
rs17056136	0.84[MKK][hapmap]
rs17056198	1.00[AMR][1000 genomes]
rs17056201	1.00[AMR][1000 genomes]
rs17056237	1.00[AMR][1000 genomes]
rs17056255	1.00[AMR][1000 genomes]
rs17056266	1.00[AMR][1000 genomes]
rs17056373	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17056398	1.00[AMR][1000 genomes]
rs1924281	1.00[AMR][1000 genomes]
rs4531605	1.00[AMR][1000 genomes]
rs731860	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7981658	1.00[AMR][1000 genomes]
rs7984916	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38135200-38168800	Strong transcription	Osteobl	bone
2	chr13:38135600-38165400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:38139000-38171000	Weak transcription	Fetal Kidney	kidney
4	chr13:38143400-38166000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr13:38146600-38162000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:38148000-38167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:38150000-38171000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:38150200-38171400	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:38151200-38162200	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr13:38152600-38171200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr13:38155400-38168600	Weak transcription	Fetal Heart	heart
12	chr13:38155400-38168800	Weak transcription	NHLF	lung
13	chr13:38158000-38161400	Strong transcription	NH-A	brain
14	chr13:38158400-38168800	Weak transcription	Fetal Stomach	stomach
15	chr13:38159800-38167600	Weak transcription	Fetal Muscle Leg	muscle
16	chr13:38160600-38168800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr13:38160800-38163000	Weak transcription	Placenta	Placenta
18	chr13:38161200-38162000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:38161200-38162000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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