Variant report

Variant	rs17056272
Chromosome Location	chr13:38197627-38197628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1358995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056136	1.00[EUR][1000 genomes]
rs17056144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056209	1.00[EUR][1000 genomes]
rs17056217	1.00[EUR][1000 genomes]
rs17056268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056282	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17056326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17056342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957211	1.00[EUR][1000 genomes]
rs3887894	1.00[EUR][1000 genomes]
rs4387481	1.00[EUR][1000 genomes]
rs4391926	1.00[EUR][1000 genomes]
rs57148437	1.00[AMR][1000 genomes]
rs57947059	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59153705	1.00[AMR][1000 genomes]
rs604068	1.00[EUR][1000 genomes]
rs60859717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61090146	1.00[AMR][1000 genomes]
rs61547984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563552	1.00[AMR][1000 genomes]
rs6563554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7332439	1.00[AMR][1000 genomes]
rs7992050	1.00[AMR][1000 genomes]
rs7996522	1.00[EUR][1000 genomes]
rs7997279	1.00[AMR][1000 genomes]
rs7998063	1.00[AMR][1000 genomes]
rs7999407	1.00[AMR][1000 genomes]
rs7999594	1.00[AMR][1000 genomes]
rs7999882	1.00[AMR][1000 genomes]
rs9532068	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv430553	chr13:38184100-38203200	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38193400-38209400	Weak transcription	Osteobl	bone
2	chr13:38196400-38197800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:38196600-38210400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:38196800-38206600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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