Variant report

Variant	rs17058085
Chromosome Location	chr4:173088087-173088088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10003069	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10005071	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10011409	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10012756	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10014481	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10015076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10015447	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10016776	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10017456	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10019010	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10019067	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10019168	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10026247	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10026922	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10028917	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10028922	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10030547	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11132928	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11132930	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11132931	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12505392	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12506901	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13110849	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13124037	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13434475	0.85[ASN][1000 genomes]
rs1491617	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1540653	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17058064	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17058106	0.86[MEX][hapmap]
rs1873567	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1873568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1907562	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2067512	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2202281	0.82[LWK][hapmap];0.86[MEX][hapmap]
rs28458891	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28461733	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28482366	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28516712	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28526698	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28666601	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28825385	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34771884	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35379123	0.82[ASN][1000 genomes]
rs3886930	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4467518	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4479668	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4692912	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4692913	0.85[ASN][1000 genomes]
rs56200377	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6553608	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6553609	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6553610	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6553611	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6553612	0.80[AMR][1000 genomes]
rs6812091	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6815512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6828849	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6831860	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[ASN][1000 genomes]
rs6835483	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6839159	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840554	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6840612	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6841027	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846244	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6852117	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6852175	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs719799	0.80[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72700949	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72700951	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7377365	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7377366	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7377766	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7663336	0.81[CEU][hapmap];0.92[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs7663655	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7664816	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7665545	0.85[ASN][1000 genomes]
rs7677333	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs7678546	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7684985	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7685381	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7693499	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7697010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9884573	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9991515	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9994170	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830153	chr4:173038006-173211957	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1019896	chr4:173080612-173136826	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17058085	ASB5	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links