Variant report

Variant	rs17058337
Chromosome Location	chr4:173287704-173287705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11934354	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11942395	0.91[YRI][hapmap]
rs11942831	0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11943904	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058214	1.00[MEX][hapmap]
rs17058341	1.00[MEX][hapmap]
rs17058400	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058405	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17058526	1.00[MEX][hapmap]
rs17058604	1.00[MEX][hapmap]
rs6553627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6856936	1.00[MEX][hapmap]
rs7666004	0.91[YRI][hapmap]
rs7680698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7682018	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880416	chr4:173287422-173388217	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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