Variant report

Variant	rs17058833
Chromosome Location	chr13:61339775-61339776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73539625	0.97[AFR][1000 genomes]
rs73547536	0.89[AFR][1000 genomes]
rs73547544	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817223	chr13:60623429-61453435	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv900241	chr13:61217896-61368021	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832623	chr13:61303818-61468576	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1037954	chr13:61319533-61395907	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv561866	chr13:61328813-61388794	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61333800-61340000	Weak transcription	HMEC	breast
2	chr13:61334600-61339800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:61334600-61339800	Weak transcription	NHEK	skin
4	chr13:61335000-61339800	Weak transcription	HUVEC	blood vessel
5	chr13:61339200-61339800	Enhancers	Fetal Heart	heart
6	chr13:61339400-61340000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr13:61339400-61340200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:61339400-61340200	Enhancers	Fetal Intestine Small	intestine
9	chr13:61339400-61340600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:61339400-61340600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:61339400-61340600	Enhancers	Fetal Intestine Large	intestine
12	chr13:61339400-61341200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:61339600-61340200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:61339600-61341000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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