Variant report

Variant	rs17058938
Chromosome Location	chr6:99348389-99348390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:99347506..99349910-chr6:99350007..99352724,3	K562	blood:
2	chr6:99348271..99349915-chr6:99394384..99396061,2	MCF-7	breast:
3	chr6:99346671..99348823-chr6:99348943..99351843,2	MCF-7	breast:
4	chr6:99346750..99349910-chr6:99350007..99353746,4	K562	blood:
5	chr6:99330002..99333945-chr6:99345495..99348952,3	K562	blood:

Variant related genes	Relation type
ENSG00000112234	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1474606	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1031376	chr6:99337783-99394171	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538386	chr6:99337783-99394171	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99297000-99386000	Weak transcription	Fetal Brain Male	brain
2	chr6:99304000-99358600	Weak transcription	Aorta	Aorta
3	chr6:99304600-99387200	Weak transcription	A549	lung
4	chr6:99309600-99351600	Weak transcription	NHDF-Ad	bronchial
5	chr6:99309600-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:99309800-99377400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:99311400-99356600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:99312000-99370800	Weak transcription	Esophagus	oesophagus
9	chr6:99312600-99372600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:99312800-99351600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:99315600-99358600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:99318600-99355800	Weak transcription	Colonic Mucosa	Colon
13	chr6:99319400-99360000	Weak transcription	NH-A	brain
14	chr6:99319400-99393600	Weak transcription	NHLF	lung
15	chr6:99320200-99379400	Weak transcription	NHEK	skin
16	chr6:99320400-99393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:99321000-99355800	Weak transcription	Spleen	Spleen
18	chr6:99321000-99369000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:99321600-99359800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:99322400-99373200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:99323600-99349000	Weak transcription	Pancreas	Pancrea
22	chr6:99323600-99354600	Weak transcription	Brain Anterior Caudate	brain
23	chr6:99326000-99380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:99328600-99356000	Weak transcription	Osteobl	bone
25	chr6:99328800-99356000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:99328800-99384800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:99333200-99355000	Weak transcription	Small Intestine	intestine
28	chr6:99334200-99360800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:99334800-99353000	Weak transcription	Thymus	Thymus
30	chr6:99335000-99376000	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:99337400-99373600	Weak transcription	K562	blood
32	chr6:99338000-99359000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:99339200-99354000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:99339400-99354000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:99339800-99355400	Weak transcription	HSMMtube	muscle
36	chr6:99339800-99355600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:99340000-99357200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:99340600-99356000	Weak transcription	Stomach Mucosa	stomach
39	chr6:99341200-99350000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:99341200-99351800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:99341400-99353600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:99344000-99354000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:99344000-99354000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:99344400-99349600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:99344400-99351000	Weak transcription	Brain Germinal Matrix	brain
46	chr6:99345000-99349400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:99345000-99349800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:99345000-99351400	Strong transcription	Adipose Nuclei	Adipose
49	chr6:99345000-99353800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:99345200-99349400	Strong transcription	Duodenum Mucosa	Duodenum

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