Variant report

Variant	rs17061335
Chromosome Location	chr3:59871414-59871415
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11924342	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11924368	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17061328	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17061352	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17061366	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17061380	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17061381	1.00[JPT][hapmap]
rs17061388	1.00[JPT][hapmap]
rs17299290	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17299801	1.00[JPT][hapmap]
rs17365142	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365190	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4368451	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55720112	1.00[ASN][1000 genomes]
rs56010440	1.00[ASN][1000 genomes]
rs56145583	1.00[ASN][1000 genomes]
rs56192120	1.00[ASN][1000 genomes]
rs56233685	1.00[ASN][1000 genomes]
rs56242402	1.00[ASN][1000 genomes]
rs56414037	0.84[EUR][1000 genomes]
rs602197	1.00[JPT][hapmap]
rs620113	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs687069	1.00[JPT][hapmap]
rs73100649	1.00[ASN][1000 genomes]
rs73100651	1.00[ASN][1000 genomes]
rs73100660	1.00[ASN][1000 genomes]
rs73100663	1.00[ASN][1000 genomes]
rs73100666	1.00[ASN][1000 genomes]
rs73100668	1.00[ASN][1000 genomes]
rs73100670	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100672	1.00[ASN][1000 genomes]
rs73100675	1.00[ASN][1000 genomes]
rs73100680	0.84[EUR][1000 genomes]
rs73100688	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100697	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73100701	0.84[EUR][1000 genomes]
rs750793	1.00[JPT][hapmap]
rs9864403	1.00[JPT][hapmap]
rs9868156	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv460565	chr3:59842644-59877988	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv470616	chr3:59842644-59877988	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv590385	chr3:59842644-59877988	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv590386	chr3:59846067-59912377	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59865600-59871600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:59868800-59882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:59869400-59873600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:59869400-59873800	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:59869600-59873400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:59869800-59873200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:59870200-59872200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:59870200-59874000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:59870400-59871600	Enhancers	Primary T cells from cord blood	blood
10	chr3:59870400-59873600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:59870400-59874000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:59870800-59872200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:59870800-59872600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:59870800-59872600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:59871000-59872000	Enhancers	Thymus	Thymus
16	chr3:59871000-59872200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:59871000-59872600	Enhancers	Fetal Thymus	thymus
18	chr3:59871400-59871800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:59871400-59871800	Enhancers	Brain Hippocampus Middle	brain
20	chr3:59871400-59871800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr3:59871400-59872000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr3:59871400-59872600	Enhancers	Dnd41	blood
23	chr3:59871400-59879200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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