Variant report

Variant	rs17061614
Chromosome Location	chr6:132993506-132993507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17061372	1.00[MEX][hapmap]
rs17061589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17061591	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17061593	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17061596	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17061599	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17061609	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132991000-132995200	Enhancers	Fetal Intestine Large	intestine
2	chr6:132991000-132995200	Enhancers	Fetal Intestine Small	intestine
3	chr6:132991400-132993600	Weak transcription	Small Intestine	intestine
4	chr6:132991400-132997200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:132991600-132993600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132991800-132993800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:132991800-132996400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:132991800-132997000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:132992000-132993800	Enhancers	HepG2	liver
10	chr6:132992000-132996200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:132992400-132996200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:132992800-132993800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:132993200-133002200	Weak transcription	Liver	Liver
14	chr6:132993400-132993600	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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