Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11154744	0.81[ASN][1000 genomes]
rs11154745	0.91[ASN][1000 genomes]
rs1208256	0.80[ASN][1000 genomes]
rs12193307	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12196907	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12203224	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12204363	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12206782	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12213745	0.83[ASN][1000 genomes]
rs1414668	0.84[ASN][1000 genomes]
rs1414670	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17062904	0.92[ASN][1000 genomes]
rs1855895	0.83[ASN][1000 genomes]
rs4895387	0.91[ASN][1000 genomes]
rs4895987	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895989	0.90[ASN][1000 genomes]
rs4895990	0.83[ASN][1000 genomes]
rs4895991	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4895994	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569906	0.91[ASN][1000 genomes]
rs6909803	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv969328	chr6:134100197-134102306	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134086200-134112400	Weak transcription	Aorta	Aorta
2	chr6:134096000-134112400	Weak transcription	HSMM	muscle
3	chr6:134097800-134102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:134099200-134102800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:134099400-134102400	Enhancers	Osteobl	bone
6	chr6:134099800-134101800	Enhancers	Fetal Lung	lung
7	chr6:134100000-134101600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:134100200-134101200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:134100600-134101600	Enhancers	NHDF-Ad	bronchial
10	chr6:134100800-134101200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:134101000-134101600	Enhancers	Ovary	ovary

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