Variant report

Variant	rs17065058
Chromosome Location	chr13:76371175-76371176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11842375	0.86[AFR][1000 genomes]
rs17065048	1.00[AFR][1000 genomes]
rs17065062	1.00[AFR][1000 genomes]
rs17065070	1.00[AFR][1000 genomes]
rs17065073	1.00[AFR][1000 genomes]
rs9600547	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76358200-76371400	Weak transcription	NHEK	skin
2	chr13:76361600-76397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr13:76361800-76377400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:76362000-76376600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr13:76362600-76377000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:76363000-76377000	Weak transcription	GM12878-XiMat	blood
7	chr13:76363200-76372400	Weak transcription	HMEC	breast
8	chr13:76363200-76376400	Weak transcription	Esophagus	oesophagus
9	chr13:76363200-76381800	Weak transcription	Fetal Stomach	stomach
10	chr13:76363400-76371600	Weak transcription	Colonic Mucosa	Colon
11	chr13:76363600-76371400	Weak transcription	Small Intestine	intestine
12	chr13:76364600-76385000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:76364800-76371600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr13:76366400-76372800	Weak transcription	Right Ventricle	heart
15	chr13:76366400-76376600	Weak transcription	Left Ventricle	heart
16	chr13:76366400-76380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:76366800-76374800	Weak transcription	Aorta	Aorta
18	chr13:76366800-76376600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr13:76366800-76379400	Weak transcription	Pancreas	Pancrea
20	chr13:76366800-76379400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr13:76366800-76380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:76366800-76380200	Weak transcription	Lung	lung
23	chr13:76367000-76372000	Weak transcription	Gastric	stomach
24	chr13:76367000-76374000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr13:76367000-76377000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:76367000-76379800	Weak transcription	Brain Angular Gyrus	brain
27	chr13:76367000-76380200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr13:76367000-76387000	Weak transcription	Ovary	ovary
29	chr13:76367200-76371200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:76367200-76371400	Weak transcription	Stomach Mucosa	stomach
31	chr13:76367200-76371400	Weak transcription	NHLF	lung
32	chr13:76367200-76374200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr13:76367200-76377400	Weak transcription	Fetal Kidney	kidney
34	chr13:76367400-76373000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr13:76367400-76374000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr13:76367400-76374400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr13:76367400-76377400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr13:76367400-76380600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr13:76367400-76384400	Weak transcription	Fetal Lung	lung
40	chr13:76367600-76371800	Weak transcription	Fetal Heart	heart
41	chr13:76368000-76372000	Weak transcription	A549	lung
42	chr13:76368200-76371200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr13:76368600-76371600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr13:76369000-76374000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr13:76369200-76372200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:76369600-76371600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:76369600-76377400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr13:76369800-76371200	Genic enhancers	Liver	Liver
49	chr13:76369800-76371600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr13:76369800-76371800	Strong transcription	HSMMtube	muscle

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