Variant report

Variant	rs17066011
Chromosome Location	chr13:76868251-76868252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12583619	1.00[CEU][hapmap]
rs12583951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1566907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066043	0.82[EUR][1000 genomes]
rs17066056	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76866400-76868800	Enhancers	HSMM	muscle
2	chr13:76866800-76868600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:76866800-76868600	Enhancers	Osteobl	bone
4	chr13:76867000-76868400	Enhancers	HUVEC	blood vessel
5	chr13:76867000-76868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:76867200-76868400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:76867200-76868800	Enhancers	A549	lung
8	chr13:76867200-76868800	Enhancers	NHDF-Ad	bronchial
9	chr13:76867400-76868400	Enhancers	NHLF	lung
10	chr13:76867600-76868800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:76868000-76868400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:76868000-76868400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:76868000-76868400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr13:76868000-76868400	Enhancers	NH-A	brain
15	chr13:76868000-76868600	Enhancers	HSMMtube	muscle
16	chr13:76868200-76868400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr13:76868200-76868600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:76868200-76871600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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