Variant report

Variant	rs17066112
Chromosome Location	chr8:3291067-3291068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10093282	0.81[AMR][1000 genomes]
rs10096046	0.86[EUR][1000 genomes]
rs10113529	0.87[EUR][1000 genomes]
rs10282982	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs12678935	0.87[EUR][1000 genomes]
rs13248356	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13269697	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13273724	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550890	0.85[EUR][1000 genomes]
rs17066009	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs17320990	1.00[CHB][hapmap]
rs17394011	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875071	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2121653	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28400437	0.87[EUR][1000 genomes]
rs2840099	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28411980	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28419735	0.81[AMR][1000 genomes]
rs28438564	0.84[EUR][1000 genomes]
rs28465534	0.87[EUR][1000 genomes]
rs28525140	0.86[EUR][1000 genomes]
rs28525416	0.81[AMR][1000 genomes]
rs28594776	0.86[EUR][1000 genomes]
rs28735267	0.82[EUR][1000 genomes]
rs28736728	0.81[AMR][1000 genomes]
rs2897376	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs35812877	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41432447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs62503517	1.00[ASN][1000 genomes]
rs62503523	1.00[ASN][1000 genomes]
rs62505604	0.93[EUR][1000 genomes]
rs62505605	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62505622	0.87[EUR][1000 genomes]
rs62505623	0.87[EUR][1000 genomes]
rs6558770	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981641	1.00[ASN][1000 genomes]
rs6987527	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000196	1.00[ASN][1000 genomes]
rs7004117	1.00[ASN][1000 genomes]
rs7010586	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011313	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015224	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7018165	0.89[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7018325	0.83[CEU][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73497412	0.87[EUR][1000 genomes]
rs73497427	0.87[EUR][1000 genomes]
rs9314487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033589	chr8:2498609-3305100	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018407	chr8:2724294-3305100	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv915568	chr8:2725834-3291312	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1025408	chr8:2733604-3302447	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1033242	chr8:3283564-3304283	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv609736	chr8:3284183-3295628	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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