Variant report

Variant	rs17066731
Chromosome Location	chr8:3504038-3504039
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:3503109..3505550-chr8:3506422..3509146,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10089138	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10095166	1.00[CHB][hapmap]
rs10104318	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10105577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10105599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10110793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11775478	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11775483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11778221	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11783239	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12542452	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12542951	1.00[CHB][hapmap]
rs12544198	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12544795	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12549735	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13250019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13250917	1.00[CHB][hapmap]
rs13275720	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1481706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1482197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17067079	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17067268	1.00[CHB][hapmap]
rs1905025	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2251857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2449207	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2449208	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2469377	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2469378	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623582	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623587	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623592	1.00[CHB][hapmap]
rs2623595	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2623704	1.00[CHB][hapmap]
rs2623705	1.00[CHB][hapmap]
rs2623706	1.00[CHB][hapmap]
rs2623709	1.00[CHB][hapmap]
rs2623711	1.00[CHB][hapmap]
rs2623712	1.00[CHB][hapmap]
rs2624059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2624068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2624070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2624108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2720824	1.00[CHB][hapmap]
rs2720830	1.00[CHB][hapmap]
rs2720831	1.00[CHB][hapmap]
rs2720834	1.00[CHB][hapmap]
rs2720836	1.00[CHB][hapmap]
rs4472537	1.00[CHB][hapmap]
rs4503122	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4875776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5003043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6981596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6981931	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6983298	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6983391	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6985082	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6994482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6994494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6994669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6995848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6996329	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7825205	1.00[CHB][hapmap]
rs7826851	1.00[CHB][hapmap]
rs900224	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9285037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9285038	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9657366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9792136	1.00[JPT][hapmap]
rs9942728	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1028926	chr8:3318340-3667389	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv539353	chr8:3318340-3667389	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:3503200-3504600	Enhancers	Brain Substantia Nigra	brain
2	chr8:3503200-3504800	Enhancers	Brain Cingulate Gyrus	brain
3	chr8:3504000-3504400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr8:3504000-3504400	Enhancers	Fetal Muscle Leg	muscle
5	chr8:3504000-3504600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr8:3504000-3504600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:3504000-3504600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:3504000-3504600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:3504000-3504600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:3504000-3504800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:3504000-3505000	Enhancers	Fetal Lung	lung

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