Variant report

Variant	rs1706801
Chromosome Location	chr15:45625588-45625589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1145075	0.97[YRI][hapmap];0.81[AMR][1000 genomes]
rs1145094	0.90[YRI][hapmap]
rs1145095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1145096	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1145099	0.97[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1153833	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1153848	0.97[YRI][hapmap];0.81[AMR][1000 genomes]
rs1153850	0.90[YRI][hapmap]
rs1153851	0.89[YRI][hapmap]
rs1153856	0.89[YRI][hapmap]
rs1706800	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1706802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1719248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1834686	0.81[AMR][1000 genomes]
rs2217121	0.90[YRI][hapmap]
rs2413765	0.81[AMR][1000 genomes]
rs2433604	0.90[YRI][hapmap]
rs2453547	0.81[AMR][1000 genomes]
rs2467859	0.81[AMR][1000 genomes]
rs2486271	0.89[YRI][hapmap]
rs2789612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024550	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45616200-45625600	Weak transcription	Fetal Intestine Small	intestine
2	chr15:45620800-45625600	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:45621200-45625600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:45623000-45625600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:45623400-45625600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:45623800-45626800	Enhancers	Fetal Muscle Leg	muscle
7	chr15:45624200-45626400	Enhancers	HepG2	liver
8	chr15:45624400-45625600	Weak transcription	Brain Substantia Nigra	brain
9	chr15:45624400-45625600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:45624400-45626800	Enhancers	Fetal Stomach	stomach
11	chr15:45624800-45626000	Enhancers	Brain Anterior Caudate	brain
12	chr15:45624800-45626800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr15:45624800-45626800	Enhancers	Ovary	ovary
14	chr15:45625000-45625800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:45625000-45625800	Enhancers	Brain Angular Gyrus	brain
16	chr15:45625000-45625800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr15:45625000-45626000	Enhancers	Fetal Muscle Trunk	muscle
18	chr15:45625000-45626000	Enhancers	Placenta	Placenta
19	chr15:45625000-45626600	Enhancers	Stomach Mucosa	stomach
20	chr15:45625000-45626800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:45625000-45626800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:45625000-45626800	Enhancers	Duodenum Mucosa	Duodenum
23	chr15:45625000-45626800	Enhancers	Fetal Intestine Large	intestine
24	chr15:45625000-45627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:45625000-45627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:45625000-45628000	Enhancers	Liver	Liver
27	chr15:45625200-45626200	Enhancers	Pancreas	Pancrea
28	chr15:45625400-45625800	Weak transcription	Gastric	stomach

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