Variant report

Variant	rs17068869
Chromosome Location	chr5:167059561-167059562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12657312	1.00[TSI][hapmap]
rs279412	1.00[JPT][hapmap]
rs41416744	1.00[TSI][hapmap]
rs4869073	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167047800-167059600	Weak transcription	HSMM	muscle
2	chr5:167056400-167062200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:167057400-167059800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167057400-167060000	Weak transcription	HMEC	breast
5	chr5:167057400-167060200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167057600-167059600	Weak transcription	NHEK	skin
7	chr5:167058600-167060200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:167059000-167061200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links