Variant report

Variant	rs17069523
Chromosome Location	chr5:167419379-167419380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13158058	1.00[JPT][hapmap]
rs17069519	1.00[ASW][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167408000-167419800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:167408200-167419800	Weak transcription	NHEK	skin
4	chr5:167413800-167419800	Weak transcription	Right Ventricle	heart
5	chr5:167413800-167432000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167416800-167419800	Weak transcription	Left Ventricle	heart
7	chr5:167417000-167419400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167417000-167420000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167417200-167426400	Weak transcription	HSMM	muscle
10	chr5:167418400-167421600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167418600-167420800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:167418600-167426000	Weak transcription	Fetal Lung	lung
13	chr5:167418800-167421200	Weak transcription	Esophagus	oesophagus
14	chr5:167419200-167423400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:167419200-167428000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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