Variant report

Variant	rs17070052
Chromosome Location	chr5:167710221-167710222
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17070023	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17070027	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17070030	1.00[ASN][1000 genomes]
rs17070043	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17632540	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55777046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385560	1.00[ASN][1000 genomes]
rs62385562	1.00[ASN][1000 genomes]
rs62385592	1.00[ASN][1000 genomes]
rs62385593	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66482664	1.00[ASN][1000 genomes]
rs6868534	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6887837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72835020	1.00[ASN][1000 genomes]
rs73389248	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv5117	chr5:167666701-167711857	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167704400-167713000	Weak transcription	Fetal Brain Male	brain
2	chr5:167704600-167718000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:167704800-167711000	Weak transcription	Pancreas	Pancrea
4	chr5:167704800-167712400	Weak transcription	Gastric	stomach
5	chr5:167709400-167712800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:167709400-167713200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:167709600-167713000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:167709600-167713000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:167709600-167713000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:167709600-167713400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:167709600-167713600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:167709600-167714800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:167709600-167718000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:167709600-167718000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167709600-167718000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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