Variant report

Variant	rs17070108
Chromosome Location	chr6:109310002-109310003
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109309902..109311666-chr6:109314913..109316712,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17070151	0.83[AFR][1000 genomes]
rs17070184	0.83[AFR][1000 genomes]
rs61731699	0.83[AFR][1000 genomes]
rs7760310	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830768	chr6:109177268-109357600	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv886532	chr6:109281620-109383659	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109290400-109330000	Weak transcription	Gastric	stomach
2	chr6:109301600-109311400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:109302000-109311000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:109303800-109311000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:109304600-109323400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:109305000-109323600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:109305400-109310200	Weak transcription	Aorta	Aorta
8	chr6:109305600-109311200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:109305600-109322800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:109305600-109323400	Weak transcription	Small Intestine	intestine
11	chr6:109306000-109316000	Strong transcription	Adipose Nuclei	Adipose
12	chr6:109306600-109315400	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:109306600-109319800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:109306600-109324000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:109306800-109315600	Strong transcription	Primary T cells from cord blood	blood
16	chr6:109306800-109317200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:109306800-109322800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:109306800-109323200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:109306800-109328200	Weak transcription	HUVEC	blood vessel
20	chr6:109307000-109323000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:109307200-109310600	Enhancers	Fetal Heart	heart
22	chr6:109307200-109310800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:109307200-109311000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:109307200-109311000	Weak transcription	Fetal Kidney	kidney
25	chr6:109307200-109312600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:109307200-109313400	Strong transcription	Brain Hippocampus Middle	brain
27	chr6:109307200-109315800	Strong transcription	Placenta	Placenta
28	chr6:109307200-109317200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:109307200-109320000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:109307200-109321800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:109307200-109322600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:109307200-109322800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:109307400-109310800	Strong transcription	Duodenum Mucosa	Duodenum
34	chr6:109307400-109311200	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr6:109307400-109311400	Weak transcription	NHLF	lung
36	chr6:109307400-109315800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:109307400-109316600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:109307400-109317400	Strong transcription	HSMM	muscle
39	chr6:109307400-109322600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:109307600-109310400	Weak transcription	K562	blood
41	chr6:109307600-109310600	Strong transcription	Liver	Liver
42	chr6:109307600-109315200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:109307600-109322800	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:109307600-109329800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:109307800-109310400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:109307800-109311000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr6:109307800-109312400	Strong transcription	Osteobl	bone
48	chr6:109307800-109313200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr6:109307800-109313600	Strong transcription	Fetal Stomach	stomach
50	chr6:109307800-109314200	Strong transcription	Brain Inferior Temporal Lobe	brain

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