Variant report

Variant	rs17070156
Chromosome Location	chr13:48059358-48059359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17070253	0.94[AFR][1000 genomes]
rs57191901	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48056600-48064200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:48057600-48059400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:48057800-48059400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr13:48058200-48059400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:48058200-48059400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:48058200-48059400	Enhancers	HMEC	breast
7	chr13:48058200-48059400	Enhancers	NHEK	skin
8	chr13:48058200-48059400	Enhancers	NHLF	lung
9	chr13:48058200-48059800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:48058400-48059600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:48058600-48059400	Enhancers	NH-A	brain
12	chr13:48058800-48059400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:48059200-48059600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr13:48059200-48060600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:48059200-48064600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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