Variant report

Variant	rs17070756
Chromosome Location	chr13:69771072-69771073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17070753	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084823	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2829986	chr13:69546717-69775097	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv900472	chr13:69631125-69789325	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv900474	chr13:69684848-69773503	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv900475	chr13:69759676-69775097	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv900476	chr13:69759676-69782361	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv900477	chr13:69759676-69789325	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv455962	chr13:69762895-69784971	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv562204	chr13:69762895-69784971	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv455964	chr13:69762943-69775097	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv562205	chr13:69762943-69775097	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv471148	chr13:69762943-69782361	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv455965	chr13:69763061-69775097	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv562206	chr13:69763061-69775097	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17070756	SIX3	trans	lymphoblastoid	seeQTL
rs17070756	RND3	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69762800-69773800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:69768200-69773200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:69768400-69771200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:69768400-69775000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:69768800-69774200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:69769800-69773800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:69770000-69773800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:69770400-69773800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:69770600-69772000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:69771000-69782600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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