Variant report

Variant	rs17070986
Chromosome Location	chr6:141883727-141883728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:141872843..141874835-chr6:141881492..141883832,2	MCF-7	breast:
2	chr6:139688968..139691016-chr6:141882532..141884352,2	MCF-7	breast:
3	chr6:139692928..139695826-chr6:141882361..141885438,4	MCF-7	breast:
4	chr6:141630271..141631033-chr6:141883682..141884206,2	MCF-7	breast:
5	chr6:141630179..141631093-chr6:141883723..141884605,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17070992	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17330896	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484527	1.00[EUR][1000 genomes]
rs9496120	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141881600-141884800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:141883000-141883800	Active TSS	Adipose Nuclei	Adipose
3	chr6:141883000-141884000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:141883000-141884000	Flanking Active TSS	HUVEC	blood vessel
5	chr6:141883000-141884200	Active TSS	Primary B cells from cord blood	blood
6	chr6:141883000-141884800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:141883000-141884800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:141883000-141885000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:141883000-141885400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:141883200-141883800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
11	chr6:141883200-141883800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:141883200-141883800	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr6:141883200-141883800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:141883200-141883800	Flanking Active TSS	Thymus	Thymus
15	chr6:141883200-141883800	Flanking Active TSS	GM12878-XiMat	blood
16	chr6:141883200-141883800	Flanking Active TSS	Osteobl	bone
17	chr6:141883200-141884000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:141883200-141884000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr6:141883200-141884000	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr6:141883200-141884000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:141883200-141884000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:141883200-141884000	Active TSS	Colonic Mucosa	Colon
23	chr6:141883200-141884000	Active TSS	Duodenum Mucosa	Duodenum
24	chr6:141883200-141884000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr6:141883200-141884200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:141883200-141884200	Active TSS	Fetal Kidney	kidney
27	chr6:141883200-141884200	Flanking Active TSS	Fetal Lung	lung
28	chr6:141883200-141884200	Enhancers	HMEC	breast
29	chr6:141883200-141884400	Active TSS	Aorta	Aorta
30	chr6:141883200-141884400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:141883200-141884600	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr6:141883200-141884600	Enhancers	Dnd41	blood
33	chr6:141883200-141884800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:141883200-141884800	Active TSS	Brain Substantia Nigra	brain
35	chr6:141883200-141885000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:141883200-141885000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:141883200-141885000	Active TSS	Brain Cingulate Gyrus	brain
38	chr6:141883200-141885000	Active TSS	Right Atrium	heart
39	chr6:141883200-141885800	Enhancers	Fetal Heart	heart
40	chr6:141883400-141883800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:141883400-141883800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:141883400-141883800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr6:141883400-141883800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr6:141883400-141883800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:141883400-141883800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:141883400-141883800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:141883400-141883800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:141883400-141883800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:141883400-141883800	Enhancers	Fetal Intestine Large	intestine
50	chr6:141883400-141883800	Flanking Active TSS	Fetal Intestine Small	intestine

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