Variant report

Variant	rs17071769
Chromosome Location	chr13:80251485-80251486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12583029	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12583361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12853669	0.91[ASN][1000 genomes]
rs12872859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12873323	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12873970	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12874186	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17071691	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17071740	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17071744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208937	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2329127	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34574726	0.90[EUR][1000 genomes]
rs34629137	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34757198	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34993149	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597201	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55902954	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58360508	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60407730	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6563120	0.90[EUR][1000 genomes]
rs6563123	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6563128	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6563130	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71436528	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71436529	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7324718	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7324768	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7329850	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7333290	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7335083	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7983451	0.90[EUR][1000 genomes]
rs7983467	0.90[EUR][1000 genomes]
rs7999478	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001082	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900589	chr13:80250511-80310295	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80238600-80255000	Weak transcription	Psoas Muscle	Psoas
2	chr13:80246600-80260600	Weak transcription	Fetal Lung	lung
3	chr13:80248000-80254800	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:80248200-80252000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:80248600-80252400	Weak transcription	HSMMtube	muscle
6	chr13:80249200-80253400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr13:80249800-80252200	Weak transcription	HMEC	breast
8	chr13:80250000-80253400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:80250400-80252800	Enhancers	Fetal Intestine Small	intestine
10	chr13:80250600-80252000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:80250600-80255200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:80250800-80252200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:80250800-80252600	Weak transcription	NHEK	skin
14	chr13:80251000-80252000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:80251200-80252200	Enhancers	Fetal Stomach	stomach
16	chr13:80251400-80254800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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