Variant report

Variant	rs17071792
Chromosome Location	chr13:85371734-85371735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17379243	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17379751	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17386334	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34702031	0.90[EUR][1000 genomes]
rs55709742	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56218261	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72629467	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72629474	0.90[EUR][1000 genomes]
rs72629476	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72630956	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72630957	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900698	chr13:85276978-85374146	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv900699	chr13:85276978-85400978	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900700	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900701	chr13:85276978-85429910	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85370000-85378600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:85371400-85375200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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