Variant report

Variant	rs17071950
Chromosome Location	chr6:142995822-142995823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10484588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876843	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263112	1.00[ASN][1000 genomes]
rs34541132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35154143	1.00[ASN][1000 genomes]
rs35399203	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57942326	1.00[ASN][1000 genomes]
rs58294323	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60086560	1.00[ASN][1000 genomes]
rs6570516	1.00[ASN][1000 genomes]
rs71564416	1.00[ASN][1000 genomes]
rs7746338	1.00[ASN][1000 genomes]
rs9496416	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142994400-142996400	Weak transcription	Fetal Brain Male	brain
2	chr6:142994400-142996400	Weak transcription	Fetal Lung	lung
3	chr6:142995600-142996000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:142995600-142996000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:142995800-142996200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:142995800-143001400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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