Variant report

Variant	rs17072309
Chromosome Location	chr6:143529012-143529013
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143528712..143531320-chr6:143533840..143537252,3	K562	blood:
2	chr6:143527632..143529423-chr6:143534389..143536274,2	K562	blood:

rs_ID	r²[population]
rs17072305	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17072313	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs17072316	0.83[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60991250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143479600-143534600	Weak transcription	Gastric	stomach
3	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:143514400-143545200	Weak transcription	HMEC	breast
8	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:143524400-143535200	Weak transcription	Right Atrium	heart
11	chr6:143524600-143531200	Strong transcription	K562	blood
12	chr6:143525600-143533600	Weak transcription	Aorta	Aorta
13	chr6:143525600-143534800	Weak transcription	Left Ventricle	heart
14	chr6:143525600-143544200	Weak transcription	HepG2	liver
15	chr6:143525800-143530400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:143525800-143534000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:143525800-143534600	Weak transcription	Fetal Intestine Large	intestine
18	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143526400-143530000	Weak transcription	Liver	Liver
20	chr6:143527200-143534600	Weak transcription	Fetal Lung	lung
21	chr6:143527400-143534600	Weak transcription	Fetal Kidney	kidney
22	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
23	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:143527800-143534600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:143528400-143533400	Weak transcription	Fetal Heart	heart
26	chr6:143528800-143536400	Weak transcription	Psoas Muscle	Psoas
27	chr6:143529000-143531800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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