Variant report

Variant	rs17072590
Chromosome Location	chr13:49520269-49520270
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17072558	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs33945289	1.00[ASN][1000 genomes]
rs34494225	1.00[ASN][1000 genomes]
rs357684	0.80[ASN][1000 genomes]
rs6561486	0.80[ASN][1000 genomes]
rs6561489	0.80[ASN][1000 genomes]
rs7338291	1.00[ASN][1000 genomes]
rs7985609	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49513000-49521400	Weak transcription	Stomach Mucosa	stomach
2	chr13:49514800-49524000	Weak transcription	Placenta	Placenta
3	chr13:49518600-49521400	Enhancers	Fetal Intestine Large	intestine
4	chr13:49519200-49521400	Enhancers	Fetal Intestine Small	intestine
5	chr13:49519800-49521000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr13:49520200-49520400	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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