Variant report

Variant	rs17073142
Chromosome Location	chr6:144187725-144187726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144181106..144183993-chr6:144186106..144189190,3	K562	blood:
2	chr6:144181106..144183993-chr6:144186106..144190381,4	K562	blood:
3	chr6:144183593..144185426-chr6:144187366..144189875,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17073107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932564	0.80[EUR][1000 genomes]
rs7454959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17073142	LTV1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144166000-144188600	Strong transcription	Primary T cells from cord blood	blood
2	chr6:144172400-144189000	Weak transcription	Small Intestine	intestine
3	chr6:144172600-144187800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:144175200-144187800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:144175800-144187800	Strong transcription	Brain Hippocampus Middle	brain
6	chr6:144176200-144187800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:144177600-144188200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr6:144177800-144187800	Strong transcription	Fetal Lung	lung
9	chr6:144178200-144187800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:144178800-144203800	Weak transcription	Stomach Mucosa	stomach
11	chr6:144179000-144187800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:144179600-144188400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:144179800-144191200	Weak transcription	Psoas Muscle	Psoas
14	chr6:144181200-144187800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:144181400-144188000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:144183000-144193000	Weak transcription	Spleen	Spleen
17	chr6:144183200-144188800	Weak transcription	Colonic Mucosa	Colon
18	chr6:144183200-144189000	Weak transcription	Gastric	stomach
19	chr6:144183200-144189800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:144183200-144190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:144183400-144189000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:144183600-144188000	Weak transcription	Right Ventricle	heart
23	chr6:144183600-144188200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr6:144183600-144188400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:144184600-144187800	Weak transcription	NHDF-Ad	bronchial
26	chr6:144184600-144189000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:144184600-144190600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:144184800-144188800	Weak transcription	Brain Angular Gyrus	brain
29	chr6:144185200-144188200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:144185200-144188200	Weak transcription	Placenta	Placenta
31	chr6:144185400-144188200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:144185600-144188000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:144185600-144193000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:144185800-144188200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:144185800-144188400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:144185800-144190600	Weak transcription	Fetal Kidney	kidney
37	chr6:144186000-144187800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:144186000-144187800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:144186000-144188200	Weak transcription	HUVEC	blood vessel
40	chr6:144186000-144189800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:144186000-144192400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:144186000-144192800	Weak transcription	HSMMtube	muscle
43	chr6:144186000-144223000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:144186200-144187800	Weak transcription	Primary B cells from cord blood	blood
45	chr6:144186200-144187800	Strong transcription	Brain Cingulate Gyrus	brain
46	chr6:144186200-144188800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:144186200-144193200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:144186600-144188000	Strong transcription	Fetal Muscle Leg	muscle
49	chr6:144186600-144188200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:144186600-144188800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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