Variant report

Variant	rs17073184
Chromosome Location	chr8:5219508-5219509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10093410	0.88[ASN][1000 genomes]
rs10093752	0.98[ASN][1000 genomes]
rs10094333	0.98[ASN][1000 genomes]
rs10107136	0.99[ASN][1000 genomes]
rs10107241	0.99[ASN][1000 genomes]
rs10108827	0.98[ASN][1000 genomes]
rs10108829	0.98[ASN][1000 genomes]
rs10111635	0.98[ASN][1000 genomes]
rs12677946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678277	0.98[ASN][1000 genomes]
rs12678278	0.98[ASN][1000 genomes]
rs12678704	0.98[ASN][1000 genomes]
rs12680156	0.98[ASN][1000 genomes]
rs12680171	0.98[ASN][1000 genomes]
rs12680192	0.98[ASN][1000 genomes]
rs12680194	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1358121	0.89[ASN][1000 genomes]
rs1358122	0.98[ASN][1000 genomes]
rs1358123	0.98[ASN][1000 genomes]
rs17073190	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17073206	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2052334	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2052336	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28479825	1.00[ASN][1000 genomes]
rs34090144	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34755077	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4268143	0.99[ASN][1000 genomes]
rs4404938	0.99[ASN][1000 genomes]
rs4404939	0.99[ASN][1000 genomes]
rs4410927	0.99[ASN][1000 genomes]
rs4410928	0.98[ASN][1000 genomes]
rs4475507	0.99[ASN][1000 genomes]
rs4498580	0.99[ASN][1000 genomes]
rs4535757	0.99[ASN][1000 genomes]
rs4540427	0.99[ASN][1000 genomes]
rs4582584	0.99[ASN][1000 genomes]
rs4593563	0.98[ASN][1000 genomes]
rs4641092	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59346790	0.97[ASN][1000 genomes]
rs6559008	0.99[ASN][1000 genomes]
rs6559009	0.99[ASN][1000 genomes]
rs7002499	0.99[ASN][1000 genomes]
rs73659796	0.91[EUR][1000 genomes]
rs7819482	0.95[EUR][1000 genomes]
rs7846604	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889978	chr8:4853197-5460166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv609902	chr8:5088786-5533605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031427	chr8:5129076-5603378	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1031634	chr8:5151611-5234951	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023746	chr8:5200421-5310807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1033879	chr8:5200421-5406984	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv539409	chr8:5200421-5406984	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3328438	chr8:5219484-5219684	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:5218800-5220200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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