Variant report

Variant	rs17073243
Chromosome Location	chr6:144269664-144269665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144268897..144270515-chr6:144272347..144274105,2	K562	blood:
2	chr6:144268431..144270397-chr6:144272347..144274667,2	K562	blood:
3	chr6:144266910..144268480-chr6:144268639..144270176,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2273324	1.00[EUR][1000 genomes]
rs28384404	1.00[EUR][1000 genomes]
rs2876579	1.00[EUR][1000 genomes]
rs7773026	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144253200-144272600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:144256600-144284400	Weak transcription	Aorta	Aorta
3	chr6:144258400-144288000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:144261400-144270600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:144261600-144285800	Weak transcription	Small Intestine	intestine
6	chr6:144261600-144287000	Weak transcription	GM12878-XiMat	blood
7	chr6:144263400-144280200	Weak transcription	Gastric	stomach
8	chr6:144263600-144271800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:144266000-144270400	Weak transcription	HSMM	muscle
10	chr6:144266000-144274000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr6:144266000-144277200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:144267000-144269800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:144267200-144274400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:144267400-144269800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:144267400-144269800	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr6:144267400-144270200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:144267400-144279600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:144267800-144269800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:144268000-144269800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr6:144268000-144269800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:144268000-144270000	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr6:144268000-144277200	Weak transcription	HMEC	breast
23	chr6:144268000-144281000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:144268200-144269800	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr6:144268200-144270000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:144268200-144270000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:144268200-144270400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr6:144268200-144272400	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:144268400-144269800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:144268400-144269800	ZNF genes & repeats	Fetal Lung	lung
31	chr6:144268400-144269800	ZNF genes & repeats	Ovary	ovary
32	chr6:144268400-144269800	Strong transcription	Spleen	Spleen
33	chr6:144268600-144269800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:144268600-144269800	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:144268600-144269800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:144268600-144270000	ZNF genes & repeats	Fetal Kidney	kidney
37	chr6:144268600-144270800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:144268800-144269800	Strong transcription	Left Ventricle	heart
39	chr6:144268800-144270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:144268800-144271000	Strong transcription	Adipose Nuclei	Adipose
41	chr6:144268800-144273800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:144268800-144274200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:144268800-144282200	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:144269000-144269800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr6:144269000-144269800	Strong transcription	Psoas Muscle	Psoas
46	chr6:144269000-144270000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr6:144269000-144270000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
48	chr6:144269000-144271400	Strong transcription	Primary B cells from cord blood	blood
49	chr6:144269000-144284400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:144269200-144269800	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links