Variant report

Variant	rs17073523
Chromosome Location	chr13:30061060-30061061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30059938..30062417-chr13:30069208..30071863,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132938	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11842476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17073454	1.00[MEX][hapmap]
rs17073456	1.00[MEX][hapmap]
rs17073514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17073517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036974	1.00[MEX][hapmap]
rs73452315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987266	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30047200-30081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:30055600-30070200	Weak transcription	Ovary	ovary
3	chr13:30057400-30062000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:30057400-30070200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:30058200-30070200	Weak transcription	Right Ventricle	heart
6	chr13:30058400-30063200	Weak transcription	Left Ventricle	heart
7	chr13:30058800-30068200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:30058800-30070200	Weak transcription	Right Atrium	heart
9	chr13:30059000-30061600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr13:30059000-30061800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:30059000-30062000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:30059200-30061200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr13:30059200-30061200	Weak transcription	Aorta	Aorta
14	chr13:30059200-30061600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:30059200-30061600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr13:30059200-30062000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:30059200-30065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:30059400-30061600	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:30059400-30062200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr13:30059400-30065800	Weak transcription	Dnd41	blood
21	chr13:30059800-30062800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:30060000-30063600	Weak transcription	Fetal Heart	heart
23	chr13:30060400-30061400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr13:30060800-30061400	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr13:30061000-30061200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr13:30061000-30063000	Enhancers	HUES48 Cell Line	embryonic stem cell

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