Variant report

Variant	rs17073954
Chromosome Location	chr6:144938020-144938021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2204660	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4617011	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144885800-144943400	Weak transcription	Ovary	ovary
2	chr6:144904600-144939800	Weak transcription	HSMMtube	muscle
3	chr6:144908800-144947400	Weak transcription	HUVEC	blood vessel
4	chr6:144914800-144960000	Weak transcription	Lung	lung
5	chr6:144922200-144938400	Weak transcription	Liver	Liver
6	chr6:144922600-144938600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:144922800-144939000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:144929600-144955200	Weak transcription	HepG2	liver
9	chr6:144929800-144938400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:144929800-144945600	Weak transcription	Left Ventricle	heart
11	chr6:144930000-144943800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:144930000-144945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:144930000-144950200	Weak transcription	Primary T cells from cord blood	blood
14	chr6:144930200-144940800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:144930400-144957600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:144930600-144973000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:144930800-144951800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:144930800-144957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:144931000-144958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:144934000-144938200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:144934200-144938200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:144934400-144941800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:144936000-144938200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:144936000-144941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:144937400-144938200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:144937800-144939000	Strong transcription	Primary B cells from cord blood	blood
27	chr6:144938000-144938200	Enhancers	NHDF-Ad	bronchial
28	chr6:144938000-144938400	Enhancers	Fetal Heart	heart
29	chr6:144938000-144938800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:144938000-144939200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:144938000-144939200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr6:144938000-144940000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:144938000-144941200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:144938000-144941400	Enhancers	HUES48 Cell Line	embryonic stem cell

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