Variant report

Variant	rs17074037
Chromosome Location	chr13:50829776-50829777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1016159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11838504	0.89[AFR][1000 genomes]
rs17361000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17361588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17394379	1.00[AMR][1000 genomes]
rs17395876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17459931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17460070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17460097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17462949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17473470	1.00[AMR][1000 genomes]
rs17473491	1.00[AMR][1000 genomes]
rs17474237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17587177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61082117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv561631	chr13:50761619-50846748	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50828000-50841400	Weak transcription	HepG2	liver
2	chr13:50828400-50831800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr13:50828600-50830000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:50828600-50830200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr13:50829000-50830000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:50829200-50830600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:50829200-50830800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr13:50829200-50833200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr13:50829200-50834200	Enhancers	Dnd41	blood
10	chr13:50829400-50829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr13:50829400-50830000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:50829400-50830400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr13:50829400-50830600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr13:50829400-50830600	Enhancers	Fetal Thymus	thymus
15	chr13:50829600-50830600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr13:50829600-50830600	Enhancers	Thymus	Thymus
17	chr13:50829600-50832200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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