Variant report

Variant	rs17074101
Chromosome Location	chr6:145061011-145061012
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10046132	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs10499234	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10499236	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs13204138	1.00[JPT][hapmap]
rs13214975	1.00[JPT][hapmap]
rs17074125	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17074126	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17074127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17074128	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17074139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17074162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17074207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17074234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17074279	0.81[ASN][1000 genomes]
rs17074289	1.00[AFR][1000 genomes]
rs3924754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4130560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41435047	0.85[AMR][1000 genomes]
rs4416688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs56256643	1.00[ASN][1000 genomes]
rs57644975	0.85[AMR][1000 genomes]
rs73779119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145011800-145065600	Weak transcription	Pancreas	Pancrea
2	chr6:145011800-145090200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:145011800-145096600	Weak transcription	Thymus	Thymus
4	chr6:145018400-145069000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:145024000-145087200	Weak transcription	Psoas Muscle	Psoas
6	chr6:145038600-145062200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:145040000-145094600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:145040000-145114600	Weak transcription	NHLF	lung
9	chr6:145044200-145069400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
11	chr6:145047200-145077400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:145047400-145065800	Weak transcription	Stomach Mucosa	stomach
13	chr6:145047600-145065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:145047600-145065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:145047600-145065800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:145047600-145075000	Weak transcription	Gastric	stomach
17	chr6:145047600-145083400	Weak transcription	Right Ventricle	heart
18	chr6:145047600-145096600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
20	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:145047800-145062400	Weak transcription	Small Intestine	intestine
22	chr6:145047800-145066000	Weak transcription	Brain Anterior Caudate	brain
23	chr6:145047800-145079600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:145047800-145079600	Weak transcription	NHEK	skin
25	chr6:145048200-145062800	Weak transcription	Fetal Heart	heart
26	chr6:145049400-145098400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr6:145049600-145061200	Strong transcription	Dnd41	blood
28	chr6:145049600-145088800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:145050600-145061400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:145050800-145066000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:145051000-145069200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:145051400-145063200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr6:145051600-145065800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:145051800-145065600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:145051800-145072200	Weak transcription	Osteobl	bone
36	chr6:145053000-145065600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr6:145053000-145070000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:145053000-145072800	Weak transcription	NHDF-Ad	bronchial
39	chr6:145053000-145079800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:145053200-145073800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:145053400-145065600	Weak transcription	Fetal Intestine Small	intestine
42	chr6:145053400-145069400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:145053800-145065800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:145054000-145062400	Weak transcription	Liver	Liver
45	chr6:145054000-145065800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:145054000-145065800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:145054000-145065800	Weak transcription	Fetal Kidney	kidney
48	chr6:145054000-145068400	Weak transcription	NH-A	brain
49	chr6:145054000-145072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:145054000-145095600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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