Variant report
| Variant | rs17074404 |
|---|---|
| Chromosome Location | chr6:145208507-145208508 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145202232..145204712-chr6:145207955..145210367,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12175408 | 0.89[AFR][1000 genomes] |
| rs13198108 | 0.89[AFR][1000 genomes] |
| rs13201654 | 0.89[AFR][1000 genomes] |
| rs13210889 | 0.96[AFR][1000 genomes] |
| rs13217690 | 0.87[AFR][1000 genomes] |
| rs1538401 | 0.89[AFR][1000 genomes] |
| rs1538402 | 0.91[AFR][1000 genomes] |
| rs17217446 | 0.81[EUR][1000 genomes] |
| rs2153108 | 0.89[AFR][1000 genomes] |
| rs2153109 | 0.89[AFR][1000 genomes] |
| rs2185143 | 0.89[AFR][1000 genomes] |
| rs4331997 | 0.89[AFR][1000 genomes] |
| rs4895660 | 0.89[AFR][1000 genomes] |
| rs4896761 | 0.89[AFR][1000 genomes] |
| rs57590687 | 0.83[AFR][1000 genomes] |
| rs6935054 | 0.89[AFR][1000 genomes] |
| rs6935093 | 0.89[AFR][1000 genomes] |
| rs6935436 | 0.89[AFR][1000 genomes] |
| rs9322001 | 0.89[AFR][1000 genomes] |
| rs9390249 | 0.89[AFR][1000 genomes] |
| rs9390250 | 0.89[AFR][1000 genomes] |
| rs9399516 | 0.89[AFR][1000 genomes] |
| rs9403624 | 0.87[AFR][1000 genomes] |
| rs9403625 | 0.89[AFR][1000 genomes] |
| rs9497119 | 0.92[EUR][1000 genomes] |
| rs9688355 | 0.89[AFR][1000 genomes] |
| rs9688729 | 0.87[AFR][1000 genomes] |
| rs9986446 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016747 | chr6:144917411-145599874 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv464070 | chr6:145184504-145214952 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv604823 | chr6:145184504-145214952 | Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv1850377 | chr6:145199259-145319640 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145206600-145208800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr6:145206600-145208800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 3 | chr6:145207000-145209400 | Enhancers | K562 | blood |
