Variant report

Variant	rs17074496
Chromosome Location	chr3:42515965-42515966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11129965	0.82[CHB][hapmap]
rs12107038	0.89[ASN][1000 genomes]
rs13324412	0.89[ASN][1000 genomes]
rs191767	0.84[AFR][1000 genomes]
rs6797718	0.91[EUR][1000 genomes]
rs7635496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529987	chr3:41921995-42591771	Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1005533	chr3:41953873-42596375	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	esv1804804	chr3:42515186-42582403	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42513400-42516400	Enhancers	Lung	lung
2	chr3:42513400-42519600	Enhancers	Spleen	Spleen
3	chr3:42514400-42516000	Enhancers	Esophagus	oesophagus
4	chr3:42514400-42519200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:42514600-42516200	Enhancers	Gastric	stomach
6	chr3:42515000-42516000	Enhancers	HSMMtube	muscle
7	chr3:42515000-42516600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:42515200-42516600	Enhancers	HUVEC	blood vessel
9	chr3:42515200-42518400	Weak transcription	Pancreas	Pancrea
10	chr3:42515400-42516200	Enhancers	Duodenum Mucosa	Duodenum
11	chr3:42515400-42516200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr3:42515400-42518000	Weak transcription	Adipose Nuclei	Adipose
13	chr3:42515600-42516600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:42515600-42517400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:42515600-42517400	Weak transcription	HMEC	breast
16	chr3:42515600-42517800	Weak transcription	Stomach Mucosa	stomach
17	chr3:42515800-42517600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:42515800-42517600	Weak transcription	Placenta	Placenta
19	chr3:42515800-42517600	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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