Variant report

Variant	rs17074830
Chromosome Location	chr3:42854141-42854142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:42842006..42848504-chr3:42854036..42858354,7	K562	blood:
2	chr3:42846757..42848695-chr3:42854131..42856830,2	K562	blood:
3	chr20:52318307..52319054-chr3:42853994..42854583,2	MCF-7	breast:
4	chr3:42853502..42856729-chr3:42859080..42861862,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181061	Chromatin interaction
ENSG00000144648	Chromatin interaction

rs_ID	r²[population]
rs17074630	1.00[AMR][1000 genomes]
rs17074832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56734964	1.00[AMR][1000 genomes]
rs58771312	1.00[AMR][1000 genomes]
rs59266989	1.00[AMR][1000 genomes]
rs60549782	1.00[AMR][1000 genomes]
rs72867312	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867329	1.00[AMR][1000 genomes]
rs72869041	1.00[AMR][1000 genomes]
rs72869048	1.00[AMR][1000 genomes]
rs72869053	1.00[AMR][1000 genomes]
rs72869076	1.00[AMR][1000 genomes]
rs72870823	1.00[AMR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42846800-42856400	Weak transcription	Right Atrium	heart
2	chr3:42847200-42856400	Weak transcription	NHEK	skin
3	chr3:42847400-42856200	Weak transcription	Colonic Mucosa	Colon
4	chr3:42849800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:42850800-42854200	Active TSS	Placenta	Placenta
6	chr3:42852000-42854400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:42852200-42854200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr3:42853200-42856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:42853200-42856600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:42853200-42858600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:42853400-42854800	Weak transcription	Fetal Heart	heart
12	chr3:42853600-42854200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:42853600-42856000	Weak transcription	Stomach Mucosa	stomach
14	chr3:42853600-42856400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:42853800-42855800	Weak transcription	HepG2	liver
16	chr3:42853800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:42853800-42861000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:42853800-42861200	Weak transcription	Fetal Intestine Large	intestine
19	chr3:42853800-42862200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:42854000-42855000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:42854000-42855000	Weak transcription	K562	blood
22	chr3:42854000-42856600	Weak transcription	Fetal Kidney	kidney

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