Variant report

Variant	rs1707534
Chromosome Location	chr4:166032618-166032619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:166030684..166033525-chr4:166643977..166646390,2	K562	blood:
2	chr4:166031817..166034229-chr4:166129496..166132218,3	K562	blood:
3	chr4:165818735..165821525-chr4:166031427..166033920,2	K562	blood:
4	chr4:165960228..165961989-chr4:166032009..166034492,2	K562	blood:
5	chr4:166030658..166033358-chr4:166390632..166393023,2	K562	blood:
6	chr4:164414895..164417479-chr4:166032019..166034275,3	K562	blood:
7	chr4:166012189..166014754-chr4:166031668..166033767,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000109466	Chromatin interaction
ENSG00000170088	Chromatin interaction
ENSG00000198498	Chromatin interaction
ENSG00000176979	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13110539	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165994600-166032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:165996000-166033000	Weak transcription	Thymus	Thymus
3	chr4:165999400-166033200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:165999600-166033000	Weak transcription	Osteobl	bone
5	chr4:166000600-166032800	Weak transcription	NHDF-Ad	bronchial
6	chr4:166005800-166033000	Weak transcription	NH-A	brain
7	chr4:166007200-166033000	Weak transcription	A549	lung
8	chr4:166007600-166033000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:166007600-166033000	Weak transcription	HSMMtube	muscle
10	chr4:166008600-166033000	Weak transcription	Colonic Mucosa	Colon
11	chr4:166008600-166033200	Weak transcription	Gastric	stomach
12	chr4:166009200-166033400	Weak transcription	Small Intestine	intestine
13	chr4:166009800-166032800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:166009800-166032800	Weak transcription	HMEC	breast
15	chr4:166009800-166033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:166009800-166033000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:166009800-166033200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:166009800-166033200	Weak transcription	Esophagus	oesophagus
19	chr4:166010000-166032800	Weak transcription	Fetal Kidney	kidney
20	chr4:166010000-166033000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:166010000-166033000	Weak transcription	Brain Angular Gyrus	brain
22	chr4:166010000-166033200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:166020800-166033000	Weak transcription	NHLF	lung
24	chr4:166021000-166033000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:166021000-166033000	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:166021000-166033200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:166021400-166033000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr4:166022000-166032800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:166022000-166033000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr4:166023000-166033200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:166023200-166032800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:166023200-166032800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:166023200-166032800	Weak transcription	HUVEC	blood vessel
34	chr4:166023200-166033000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:166023200-166033000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr4:166023200-166033000	Weak transcription	Right Ventricle	heart
37	chr4:166023200-166033200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:166023200-166033200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:166023200-166033200	Weak transcription	Aorta	Aorta
40	chr4:166023200-166033200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:166023200-166033200	Weak transcription	Left Ventricle	heart
42	chr4:166023200-166033200	Weak transcription	Lung	lung
43	chr4:166023200-166033200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr4:166023200-166033400	Weak transcription	Spleen	Spleen
45	chr4:166023400-166032800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr4:166023400-166032800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:166023400-166032800	Weak transcription	NHEK	skin
48	chr4:166023400-166033000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr4:166023400-166033000	Weak transcription	Brain Germinal Matrix	brain
50	chr4:166023400-166033200	Weak transcription	Fetal Stomach	stomach

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