Variant report

Variant	rs17075771
Chromosome Location	chr13:52107317-52107318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52105659..52107581-chr13:52114621..52118462,3	MCF-7	breast:
2	chr13:52026308..52028384-chr13:52105731..52108665,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17075764	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56006173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60679134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7491674	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52097600-52108600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
3	chr13:52100600-52113000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:52106400-52110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr13:52106600-52108200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:52106600-52109400	Enhancers	Hela-S3	cervix
7	chr13:52106600-52109600	Enhancers	Primary T cells from cord blood	blood
8	chr13:52106800-52107400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr13:52106800-52107400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:52106800-52107600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:52106800-52108000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr13:52106800-52108200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr13:52106800-52108200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:52106800-52108400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr13:52106800-52108400	Enhancers	HepG2	liver
16	chr13:52106800-52108600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr13:52106800-52109400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr13:52106800-52109600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr13:52106800-52109600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr13:52106800-52109600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr13:52106800-52109600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr13:52106800-52109600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr13:52106800-52110000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr13:52107000-52107400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr13:52107000-52107600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:52107000-52108600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr13:52107000-52109000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr13:52107000-52109200	Enhancers	HMEC	breast
29	chr13:52107000-52109200	Enhancers	NHEK	skin
30	chr13:52107000-52109600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr13:52107000-52114000	Weak transcription	Osteobl	bone
32	chr13:52107200-52108000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr13:52107200-52108000	Weak transcription	A549	lung
34	chr13:52107200-52108000	Weak transcription	HSMM	muscle
35	chr13:52107200-52108200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr13:52107200-52108200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:52107200-52108600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr13:52107200-52108600	Weak transcription	Fetal Thymus	thymus
39	chr13:52107200-52111400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr13:52107200-52112200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr13:52107200-52112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr13:52107200-52112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr13:52107200-52112600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr13:52107200-52114200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:52107200-52116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links