Variant report

Variant	rs17075816
Chromosome Location	chr6:114376866-114376867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17075809	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114363800-114385000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:114368800-114378600	Weak transcription	Psoas Muscle	Psoas
3	chr6:114370000-114387000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:114370200-114382000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:114370200-114389600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:114371200-114379000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:114371400-114388200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:114371600-114378600	Weak transcription	HepG2	liver
9	chr6:114372600-114380400	Strong transcription	HSMM	muscle
10	chr6:114375000-114379400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:114375400-114377200	Enhancers	Brain Substantia Nigra	brain
12	chr6:114375600-114377400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr6:114376000-114378800	Weak transcription	HSMMtube	muscle
14	chr6:114376000-114381000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:114376400-114377000	Enhancers	Fetal Lung	lung
16	chr6:114376400-114377200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:114376400-114377200	Enhancers	Brain Anterior Caudate	brain
18	chr6:114376400-114377200	Enhancers	Brain Germinal Matrix	brain
19	chr6:114376400-114377200	Enhancers	Brain Hippocampus Middle	brain
20	chr6:114376400-114378200	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:114376600-114377000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:114376600-114377000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:114376600-114377000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:114376600-114377200	Enhancers	Brain Angular Gyrus	brain
25	chr6:114376600-114382000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:114376800-114377400	Enhancers	Fetal Brain Female	brain
27	chr6:114376800-114378000	Enhancers	Fetal Brain Male	brain
28	chr6:114376800-114378600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:114376800-114380800	Weak transcription	Fetal Stomach	stomach

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