Variant report

Variant	rs17079695
Chromosome Location	chr3:47550839-47550840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:47537303..47543925-chr3:47549598..47557776,11	K562	blood:
2	chr3:47547711..47551489-chr3:47552849..47556534,6	K562	blood:
3	chr3:47540907..47543771-chr3:47549598..47551923,2	K562	blood:
4	chr3:47549356..47551528-chr3:47552849..47555390,4	K562	blood:

Variant related genes	Relation type
ENSG00000272110	Chromatin interaction
ENSG00000271161	Chromatin interaction
ENSG00000163832	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17079586	0.81[YRI][hapmap]
rs6791384	0.81[YRI][hapmap]
rs900694	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876756	chr3:47002931-47586514	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47534600-47553000	Strong transcription	Fetal Thymus	thymus
2	chr3:47534800-47552400	Strong transcription	Fetal Intestine Small	intestine
3	chr3:47534800-47553200	Strong transcription	Fetal Stomach	stomach
4	chr3:47535200-47553000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:47535600-47552800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:47536200-47553200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:47536600-47553000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:47537200-47553800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:47538400-47554000	Weak transcription	Stomach Mucosa	stomach
10	chr3:47539000-47553800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:47541400-47554000	Weak transcription	Right Atrium	heart
12	chr3:47543600-47551400	Weak transcription	NHDF-Ad	bronchial
13	chr3:47543600-47553000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:47544800-47553400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:47544800-47553800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:47545000-47552800	Weak transcription	Fetal Brain Male	brain
17	chr3:47545600-47551000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:47545600-47553400	Weak transcription	A549	lung
19	chr3:47545800-47554000	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:47546000-47551000	Weak transcription	HSMM	muscle
21	chr3:47546000-47553600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:47546000-47554000	Weak transcription	Psoas Muscle	Psoas
23	chr3:47546000-47554000	Weak transcription	Small Intestine	intestine
24	chr3:47546200-47553200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr3:47546200-47553600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:47546200-47553800	Weak transcription	Aorta	Aorta
27	chr3:47547800-47552400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:47548000-47553000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:47548200-47552400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr3:47548200-47552400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr3:47548200-47552600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:47548200-47552600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:47548200-47552600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:47548400-47552200	Strong transcription	Dnd41	blood
35	chr3:47548400-47552400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr3:47548400-47552400	Strong transcription	Pancreas	Pancrea
37	chr3:47548400-47552600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:47548400-47552600	Strong transcription	Fetal Intestine Large	intestine
39	chr3:47548400-47552600	Strong transcription	K562	blood
40	chr3:47548400-47552800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:47548400-47553000	Strong transcription	NHEK	skin
42	chr3:47548400-47553200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:47548400-47553200	Strong transcription	Fetal Muscle Leg	muscle
44	chr3:47548600-47552600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:47548600-47552600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:47548600-47553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:47548600-47553600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr3:47548800-47552400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:47548800-47552400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:47548800-47552600	Strong transcription	Monocytes-CD14+_RO01746	blood

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