Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11970553	0.81[ASN][1000 genomes]
rs12662262	0.84[JPT][hapmap]
rs1334830	0.83[EUR][1000 genomes]
rs17079741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2152076	0.83[JPT][hapmap]
rs2501518	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4565341	0.84[EUR][1000 genomes]
rs5005997	0.83[JPT][hapmap]
rs56049025	0.83[EUR][1000 genomes]
rs58772909	0.83[EUR][1000 genomes]
rs59289305	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59432410	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62423663	0.83[EUR][1000 genomes]
rs62423665	0.83[EUR][1000 genomes]
rs62423668	0.83[EUR][1000 genomes]
rs62423670	0.89[ASN][1000 genomes]
rs62423671	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939605	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6940272	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118428000-118436200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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