Variant report

Variant	rs17079788
Chromosome Location	chr6:118469233-118469234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17079783	1.00[AFR][1000 genomes]
rs17079794	1.00[AMR][1000 genomes]
rs57064045	1.00[AMR][1000 genomes]
rs57196327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118467200-118469400	Enhancers	Fetal Lung	lung
2	chr6:118467400-118470200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:118468000-118485000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:118468600-118473800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:118468800-118470200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:118468800-118470600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:118469200-118469600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr6:118469200-118469800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:118469200-118470400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:118469200-118471400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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