Variant report

Variant	rs17080387
Chromosome Location	chr5:179951789-179951790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179935454..179937135-chr5:179951603..179954291,2	MCF-7	breast:
2	chr5:179951354..179953735-chr5:179973821..179976240,2	K562	blood:
3	chr5:179951729..179953788-chr5:179957919..179959696,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17080384	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57045036	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57085108	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58914528	1.00[AMR][1000 genomes]
rs58922413	1.00[AMR][1000 genomes]
rs59133684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59184686	1.00[AMR][1000 genomes]
rs59948118	1.00[AMR][1000 genomes]
rs61670207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
4	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
6	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
8	nsv1023537	chr5:179791679-179982822	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv537985	chr5:179791679-179982822	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv1019519	chr5:179866730-179959408	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv830564	chr5:179867394-180010096	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	esv1810959	chr5:179945112-179997861	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179923600-179957000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:179924600-179957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:179927000-179954400	Weak transcription	Hela-S3	cervix
4	chr5:179929000-179959200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:179933800-179959000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:179934200-179956600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:179936800-179956200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:179938800-179956600	Weak transcription	HSMM	muscle
9	chr5:179942000-179951800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:179942000-179956400	Weak transcription	Brain Germinal Matrix	brain
11	chr5:179942000-179958800	Weak transcription	Esophagus	oesophagus
12	chr5:179942600-179959000	Weak transcription	HepG2	liver
13	chr5:179942800-179954600	Weak transcription	Fetal Intestine Large	intestine
14	chr5:179943200-179954000	Weak transcription	Fetal Intestine Small	intestine
15	chr5:179945600-179953400	Weak transcription	Dnd41	blood
16	chr5:179946000-179958400	Weak transcription	Lung	lung
17	chr5:179946200-179960800	Weak transcription	NHLF	lung
18	chr5:179946400-179956800	Weak transcription	Osteobl	bone
19	chr5:179946600-179956200	Weak transcription	NH-A	brain
20	chr5:179946800-179959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:179947000-179958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:179948000-179952800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:179948200-179953400	Enhancers	Primary T cells from cord blood	blood
24	chr5:179948200-179953400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:179948400-179956600	Weak transcription	A549	lung
26	chr5:179948800-179952200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:179948800-179952800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:179949000-179954400	Weak transcription	Primary B cells from cord blood	blood
29	chr5:179949000-179956800	Weak transcription	HMEC	breast
30	chr5:179949200-179953000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr5:179949400-179952000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr5:179949400-179953400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:179949600-179951800	Enhancers	Fetal Lung	lung
34	chr5:179949600-179956400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr5:179949800-179951800	Enhancers	Brain Hippocampus Middle	brain
36	chr5:179949800-179958800	Weak transcription	Aorta	Aorta
37	chr5:179950000-179952200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr5:179950000-179952200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr5:179950000-179952200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:179950000-179952200	Weak transcription	Ovary	ovary
41	chr5:179950000-179953400	Weak transcription	HSMMtube	muscle
42	chr5:179950000-179954600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:179950000-179954600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:179950000-179954600	Weak transcription	Pancreas	Pancrea
45	chr5:179950000-179956600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr5:179950200-179952200	Weak transcription	Right Atrium	heart
47	chr5:179950200-179952200	Weak transcription	Thymus	Thymus
48	chr5:179950200-179952200	Weak transcription	Spleen	Spleen
49	chr5:179950200-179953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:179950200-179953000	Weak transcription	H9 Cell Line	embryonic stem cell

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