Variant report

Variant	rs17080794
Chromosome Location	chr6:119378069-119378070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs41292560	1.00[EUR][1000 genomes]
rs55856250	1.00[EUR][1000 genomes]
rs59573939	1.00[EUR][1000 genomes]
rs60170790	1.00[EUR][1000 genomes]
rs60505577	0.92[EUR][1000 genomes]
rs61303401	0.86[EUR][1000 genomes]
rs6911997	0.92[EUR][1000 genomes]
rs6927108	1.00[EUR][1000 genomes]
rs6938025	0.92[EUR][1000 genomes]
rs73766832	0.92[EUR][1000 genomes]
rs73767211	1.00[EUR][1000 genomes]
rs73767215	1.00[EUR][1000 genomes]
rs73767216	1.00[EUR][1000 genomes]
rs73767219	1.00[EUR][1000 genomes]
rs73767226	1.00[EUR][1000 genomes]
rs73767230	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119375000-119382000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:119375200-119381200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:119375800-119381400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:119376400-119378400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119377600-119378200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:119377800-119378200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:119377800-119378200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:119378000-119381400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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