Variant report

Variant	rs17081391
Chromosome Location	chr6:119856817-119856818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2102041	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4380795	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60160971	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6931728	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72954938	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018182	chr6:119833609-119866803	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119854200-119857000	Enhancers	NHEK	skin
2	chr6:119855200-119861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:119855400-119857200	Enhancers	GM12878-XiMat	blood
4	chr6:119855400-119860600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:119855400-119860600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:119855400-119861600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:119855600-119861200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119855600-119861600	Weak transcription	NHDF-Ad	bronchial
9	chr6:119855800-119860600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:119856800-119860600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:119856800-119861600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:119856800-119861600	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links