Variant report

Variant	rs17082138
Chromosome Location	chr5:94185920-94185921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93860369..93860877-chr5:94185891..94186598,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10515219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17331350	0.86[JPT][hapmap]
rs255211	0.84[CHD][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94163800-94209800	Weak transcription	Dnd41	blood
3	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:94170600-94187400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr5:94173000-94189000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:94176000-94186000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94176600-94190000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:94179800-94188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
12	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:94183600-94188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr5:94183800-94189000	Weak transcription	HUVEC	blood vessel
15	chr5:94183800-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:94184800-94186400	Enhancers	Fetal Thymus	thymus
17	chr5:94184800-94186600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:94185200-94186000	Enhancers	Thymus	Thymus
19	chr5:94185200-94186200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:94185200-94186400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:94185200-94186400	Enhancers	Fetal Brain Male	brain
22	chr5:94185200-94186600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:94185200-94186600	Enhancers	Hela-S3	cervix
24	chr5:94185400-94186000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr5:94185400-94186400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr5:94185400-94186400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:94185400-94186400	Enhancers	Brain Hippocampus Middle	brain
28	chr5:94185400-94186600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:94185400-94189000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:94185600-94186000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:94185600-94186000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr5:94185600-94186000	Enhancers	Brain Germinal Matrix	brain
33	chr5:94185600-94186400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr5:94185600-94186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:94185800-94186000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr5:94185800-94186000	Enhancers	Primary T cells from cord blood	blood
37	chr5:94185800-94186000	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr5:94185800-94186000	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr5:94185800-94186000	Enhancers	Osteobl	bone
40	chr5:94185800-94186200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr5:94185800-94186200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:94185800-94186200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr5:94185800-94186200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:94185800-94186200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:94185800-94186200	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr5:94185800-94186200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr5:94185800-94186200	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr5:94185800-94186400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr5:94185800-94186400	Enhancers	Brain Substantia Nigra	brain
50	chr5:94185800-94186400	Enhancers	Fetal Brain Female	brain

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